Persimmon DB
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Blast Search
Database:
DKA_r1.0.pmol
: Pseudomolecule sequences
DKA_r1.0.cds
: Predicted nucleotide sequences
DKA_r1.0.pep
: Predicted translated sequences
protein
DLO_r1.0.pmol
: Pseudomolecule sequences
DLO_r1.1.genome
: Genome Assembly sequences
DLO_r1.1.cds
: Predicted nucleotide sequences
DLO_r1.1.pep
: Predicted translated sequences
protein
Search program:
BLASTN
search nucleotide databases using a nucleotide query.
BLASTP
search protein databases using a protein query.
BLASTX
search protein databases using a translated nucleotide query.
TBLASTN
search translated nucleotide databases using a protein query.
TBLASTX
search translated nucleotide databases using a translated nucleotide query.
Number of search results:
for which
one-line descriptions
will be reported:
for which
alignments
will be reported:
Query sequence
: (
FASTA
format recommended)
Sequence cut
Extract
Kb upstream and downstream sequences from the hit region.
Advanced settings
Expectation value
0.0001
0.001
0.01
0.1
1.0
10.0
Disable low complexity filtering (DNA:dust, AA:seg)
Optimized for short sequences (BLASTN)